siRNA / miRNA gene silencing Human - PC3 (human prostate cancer cell line) HSPA5 (GRP78)

Gene silencing through the use of small interfering RNA (siRNA) has become a primary tool for identifying disease-causing genes. There are several aspects for preparing and delivering effective siRNA to knockdown a target gene. The length of siRNA should be 21–23nt long with G/C content 30–50%. If a validated siRNA sequence for your target gene is not available, use siRNA generated against the entire target gene ORF. Always work with two or three different siRNA constructs to get reliable results. If you are not sure how much siRNA to use for a given experiment, start with a transfection concentration of 10-50 nM and use siRNA-specific transfection reagent to ensure efficient siRNA delivery in a wide range of cells.

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PC3 (bone metastatic PCa cell line, ATCC®-CRL-1435), was purchased from ATCC. PC3 cells were cultured in RPMI-1640 medium containing 10% FBS, 2.5 mM of L-glutamine and 1% penicillin/streptomycin. Both cell lines were cultured at 37 °C in a humidified tissue culture incubator containing 5% CO2. Cells were maintained and propagated at 33 °C and 5% CO2 except during co-culture experiments which were conducted at 37 °C. All cell lines were periodically checked for mycoplasma using MycoAlert™ Mycoplasma Detection Kit (Lonza). Authentication of cell lines was performed by STR DNA profiling analysis conducted by the Molecular Resources Facility at Rutgers University. Cell populations were frozen after 3 passages from the time of initial receipt and growth and were discarded after 30 passages.HSPA5 (GRP78) targeting siRNAs were purchased from Ambion (Carlsbad, USA). Two different siRNAs; Silencer® Select Pre-designed siRNA s6979 (5’ UUC UGG ACG GGC UUC AUA Gtt 3′) and s6980 (5’ UCU AGU AUC AAU GCG CUC Ctt 3′) targeting exons 6 and 8, respectively, were tested. For control, the Silencer® select negative control No. 2 siRNA was used (Ambion). siRNA transfections were performed using a modified reverse transfection technique [32] using a cocktail containing equimolar quantities of each GRP78 siRNA to maximize silencing potential. The GRP78 siRNA cocktail (or siRNA control) was diluted in Opti-MEM reduced serum medium and incubated with the TransIT-X2 dynamic delivery system (Mirus Bio) according to the manufacturer’s protocol. The siRNA-TransIT-X2 complexes were added to wells of either a 6- or 24- well plate upon which PC3 cells seeded in complete growth medium at a cell density of 7.5-9 × 105 cells/well (6 well plate) or 0.75-1 × 105 cells/well (24 well plate). GRP78 siRNA cocktail or control siRNA were used at a final concentration of 50 nM for PC3 cell line.
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