siRNA / miRNA gene silencing Mouse - Pancreatic Acinar cells Atg16l2

miRNA is the inherent gene silencing machinery which can have more than one mRNA target, whereas siRNA can be designed to target a particular mRNA target. By design, both siRNA and miRNA are 20-25 nucleotides in length. The target sequence for siRNAs is usually located within the open reading frame, between 50 and 100 nucleotides downstream of the start codon. There are two ways in which cells can be transfected with desired RNAi: 1. Direct transfection (with calcium phosphate co-precipitation or cationic lipid mediated transfection using lipofectamine or oligofectamine), and 2. Making RNAi lentiviral constructs (followed by transformation and transduction). Lentiviral constructs are time consuming, but provide a more permanent expression of RNAi in the cells, and consistent gene silencing. Direct transfection of oligonucleotides provides temporary genetic suppression. Traditional methods like calcium phosphate co-precipitation have challenges like low efficiency, poor reproducibility and cell toxicity. Whereas, cationic lipid-based transfection reagents are able to overcome these challenges, along with applicability to a large variety of eukaryotic cell lines. When using oligos, the ideal concentration lies between 10-50nM for effective transfection.

1 Matching solution
Start a discussion

Start discussion

No discussions found

Start your discussion

Share your thoughts or question with experts in your field

Start a discussion

Found 1 matching solution for this experiment

Stealth siRNA(m) Atg16l2

Thermo Fisher Scientific

Upstream tips	Protocol tips	Downstream tips
	For silencing of Atg16l2, islolated mouse pancreatic acinar cells were transfected with Atg16l2 siRNA (MSS232103; Invitrogen) and control siRNA (12935-113; Invitrogen). Atg16l2 ON-TARGET SMARTpool from Dharmacon and siCONTROL Non-Targeting Pool were also used. Transfections (100 pmoles of each siRNA) were performed using the Amaxa Nucleofactor Electroporation System. For silencing of p62, isolated mouse pancreatic acinar cells were infected with lentiviruses encoding p62 shRNA (generated in our laboratory) for 2 days with polybrene, and knock down efficiency was examined by RT-PCR or IB analysis. We used the following p62 (m) siRNA sequence: 5′-CCGCATCTACATTAAAGAGAA-3′.

Protocol tips
For silencing of Atg16l2, islolated mouse pancreatic acinar cells were transfected with Atg16l2 siRNA (MSS232103; Invitrogen) and control siRNA (12935-113; Invitrogen). Atg16l2 ON-TARGET SMARTpool from Dharmacon and siCONTROL Non-Targeting Pool were also used. Transfections (100 pmoles of each siRNA) were performed using the Amaxa Nucleofactor Electroporation System. For silencing of p62, isolated mouse pancreatic acinar cells were infected with lentiviruses encoding p62 shRNA (generated in our laboratory) for 2 days with polybrene, and knock down efficiency was examined by RT-PCR or IB analysis. We used the following p62 (m) siRNA sequence: 5′-CCGCATCTACATTAAAGAGAA-3′.

Protocol tips

For silencing of Atg16l2, islolated mouse pancreatic acinar cells were transfected with Atg16l2 siRNA (MSS232103; Invitrogen) and control siRNA (12935-113; Invitrogen). Atg16l2 ON-TARGET SMARTpool from Dharmacon and siCONTROL Non-Targeting Pool were also used. Transfections (100 pmoles of each siRNA) were performed using the Amaxa Nucleofactor Electroporation System. For silencing of p62, isolated mouse pancreatic acinar cells were infected with lentiviruses encoding p62 shRNA (generated in our laboratory) for 2 days with polybrene, and knock down efficiency was examined by RT-PCR or IB analysis. We used the following p62 (m) siRNA sequence: 5′-CCGCATCTACATTAAAGAGAA-3′.

Manufacturer protocol Publication protocol 1 Relevant paper

Can't find the product you've used to perform this experiment? It would be great if you can help us by Adding a product!

Outsource your experiment

Fill out your contact details and receive price quotes in your Inbox

Outsource experiment