Publication protocol
The density of the cells leaking from the matrix, i.e., present in the reservoir, the pH, pCO2, pO2, osmolality, concentrations of glucose, lactate, glutamine, glutamate and ammonia, were measured by Bioprofile FLEX (Nova Biomedical). The perfusion rate was calculated based on the matrix volume (150 cm3) by weighting the feed medium and harvest bottles. The cell viability was determined by measuring the activity of lactate dehydrogenase (LDH) (cytotoxicity enzymatic assay, Promega) to determine the concentration of dead cells, Cdead, in the daily harvest samples. A standard curve of released LDH activity was made from lysing known numbers of cells. The viability was then calculated as
(2)
where Cv is the viable cell density measured by the biomass sensor, volmatrix is the matrix volume, volreservoir is the reservoir volume, D is the perfusion rate. The IgG quantification was done by high-performance liquid chromatography (HPLC) Protein A method (Protein A column, Applied Biosystems, USA). Daily samples were purified and concentrated with NAb Protein A/G spin kit (Thermo Scientific, USA) and reducing sodium dodecyl sulfate-polyacylamide gel electrophoresis (SDS-PAGE) was performed. The cell specific consumption/production rates of nutrients/metabolites, the accumulated IgG production, the cell specific productivity and the volumetric productivity were calculated as previously described (Clincke et al., 2013a, Clincke et al., 2013b).
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