AllPrep DNA/RNA Mini Kit

RNA isolation / purification Bacteria - Gram positive Bacillus anthracis

Experiment
RNA isolation / purification Bacteria - Gram positive Bacillus anthracis
Product
AllPrep DNA/RNA Mini Kit from Qiagen
Manufacturer
Qiagen

Protocol tips

Upstream tips
Complete disruption of plasma membranes of cells and organelles is absolutely required to release all the nucleic acids contained in the sample.
Different samples require different methods to achieve complete disruption.
Incomplete disruption results in significantly reduced nucleic acid yields.
Overloading the spin columns significantly reduces nucleic acid yields.
Protocol tips
Homogenizing the material is necessary to redice the viscosity of the lysates caused by cell disruption.
Incomplete homogenization results in inefficient binding of DNA and RNA and therefore significantly reduced yield and purity of nucleic acids.
Excessive homogenization, on the other hand, results in shorter genomic DNA fragments.
The centrifugation temperature should be 20–25ºC.
Warm the lysate to 37ºC before transferring it to the AllPrep DNA spin column.

Publication protocol

Total RNA was purified using the All Prep DNA/RNA kit (Qiagen) following the manufacturer’s protocol, and employing the optional on-column DNase I treatment. The quality of each RNA sample was assessed using a Bioanalyzer (Agilent, Santa Clara, CA) with a quality requirement of an integrity number > 8.0 for subsequent sequencing. RNA from two biological replicates was collected for each strain and condition.

Full paper   Login or join for free to view the full paper.

Reviews

AllPrep DNA/RNA Mini Kit from Qiagen has not yet been reviewed for this experiment

We'd love it if you would be the first to write a review!

Discussion

Discussion

5 years ago

Author: Paul G. Macon United States

Some help with RNA isolation using Trizol

Hello! I used Trizol to extract total RNA from in-vitro cultured bacteria (1 X 10^8 cells). After phase separation, I mixed ~0.4 ml of the upper phase which contains RNA with 0.5 mL cold isopropanol. However, the amount of RNA when measured in Nanodrop was very low. In addition, the ratio between 260 and 230 was around 0.1 to 0.5. Is there a chance that my sample was contaminated by the Trizol reagent? When I collected the aqueous phase I made sure to not touch the lower phase. What should I do?

Share your thoughts or question with experts in your field by adding a discussion!

Papers

Check out relevant papers found by Labettor's AI that are relevant for performing RNA isolation / purification Bacteria - Gram positive Bacillus anthracis using AllPrep DNA/RNA Mini Kit from Qiagen.

Paper title
Transcriptome analysis identifies genes that respond to CO through an AtxA-dependent mechanism
Full paper
Login or join for free to view the full paper.

Manufacturer protocol

Download the product protocol from Qiagen for AllPrep DNA/RNA Mini Kit below.

Download PDF Download manufacturer protocol

Videos

Check out videos that might be relevant for performing RNA isolation / purification Bacteria - Gram positive Bacillus anthracis using AllPrep DNA/RNA Mini Kit from Qiagen. Please note that these videos are representative and steps or experiment specific processes must be kept in mind to expect desired results.

We haven't found any additional videos for this experiment / product combination yet.

Outsource your experiment

Fill out your contact details and receive price quotes in your Inbox

  Outsource experiment
Become shareholder Discussions About us Contact Privacy Terms