Publication protocol
U373MG cells were collected and washed twice with cold PBS after treatment with various quercetin concentrations. The cells were then lysed in lysis buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% Nonidet P-40, 2 mM EDTA, 1 mM EGTA, 1 mM NaVO3, 10 mM NaF, 1 mM DTT, 1 mM PMSF, 25 μg/mL aprotinin, and 25 μg/mL leupeptin) and kept in ice for 30 min. The lysates were centrifuged for 30 min at 13,000 rpm and 4°C, and the supernatants were stored at –70°C until use. Cytosolic and mitochondrial extracts were prepared using fraction lysis buffer (75 mM NaCl, 8 mM Na2HPO4, 1 mM Na2H2PO4, 250 mM sucrose, 1 mM EDTA, and 350 μg/mL digitonin). Lysed cells were kept in ice for 10 min and then centrifuged for 15 min at 15,000 rpm and 4°C. The supernatant was the cytosolic fraction. After the pellet was washed with lysis buffer, it was lysed in lysis buffer to prepare whole lysates. Protein concentration was measured using a BCA Protein Assay kit. Aliquots of the lysates (30–70 μg protein) were separated via 10–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a PVDF membrane using glycine transfer buffer (192 mM glycine, 25 mM Tris-HCl, pH 8.8, and 20% methanol, v/v). After blocking with 5% nonfat dried milk, the membranes were incubated for 4 h with primary antibodies, followed by an additional 30 min incubation with secondary antibodies in milk containing Tris-buffered saline and 0.1% Tween 20. Human anti-caspase-3, -caspase-7, -caspase-8, cleaved PARP, cytochrome c, JNK, phospho-JNK, p53, HSP60, LC3II, and Beclin-1 antibodies were used at a 1 : 1,000 dilution as the primary antibodies, and horseradish peroxidase-conjugated goat antihuman IgG was utilized as the secondary antibody at a 1 : 5,000 dilution. The membranes were then exposed to X-ray film. Protein bands were detected using the WEST-ZOL plus Western blot detection system (Intron, Gyeonggi-do, Republic of Korea).
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