Protocol tips
Upstream tips |
Protocol tips |
Downstream tips |
-Warm IP Lysis Buffer to room temperature to prevent precipitation.
-Prepare one extra plate of cells to estimate cell number.
-Thaw Protease Inhibitor Cocktail (PIC) at room temperature.
-It is recommended to take some trial to optimize sonication condition before beginning with sonication. |
- In general it is recommended that one million mammalian cells are required for each IP
fraction.
-Centrifuge the sample at 6000 × g for 5 min at 4 °C to eliminate bubbles.
-To reduce background, remove as much supernatant as possible in the last wash. Continue with next step OR store at 4°C overnight. |
|
Upstream tips |
-Warm IP Lysis Buffer to room temperature to prevent precipitation.
-Prepare one extra plate of cells to estimate cell number.
-Thaw Protease Inhibitor Cocktail (PIC) at room temperature.
-It is recommended to take some trial to optimize sonication condition before beginning with sonication. |
Protocol tips |
- In general it is recommended that one million mammalian cells are required for each IP
fraction.
-Centrifuge the sample at 6000 × g for 5 min at 4 °C to eliminate bubbles.
-To reduce background, remove as much supernatant as possible in the last wash. Continue with next step OR store at 4°C overnight. |
Publication protocol
Chromatin immunoprecipitation (ChIP) was performed in HOXD10 highly expressed Huh1 cells using HOXD10 monoclonal antibody (Life Span Bio Sciences, Inc., WA, USA) or normal rabbit IgG (negative control) according to the EpiTect ChIP One Day Kit (Qiagen, Hilden, Germany).
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