Protocol tips
Upstream tips |
Protocol tips |
Downstream tips |
-Add protease inhibitors to all lysis solutions before use. |
-Use 4 µg for 25 µg of chromatin.
-Keep cells on ice between the rounds of homogenisations.
- Increase or decrease the homogenization step to maximize the yield of nuclei depending on cell line.
|
|
Upstream tips |
-Add protease inhibitors to all lysis solutions before use. |
Protocol tips |
-Use 4 µg for 25 µg of chromatin.
-Keep cells on ice between the rounds of homogenisations.
- Increase or decrease the homogenization step to maximize the yield of nuclei depending on cell line.
|
Publication protocol
ChIP experiments were performed using the EZ ChIP Chromatin Immunoprecipitation Kit (Millipore, Billerica, USA). Four primer sets were designed to flank-related putative ERα-binding sites in the promoter region of vinculin. Details of the primer sequence are listed in Supplementary Table 9. Briefly, MCF-7 cells were fixed with 1% paraformaldehyde and sonicated seven times for 10 s each using a sonicator with a microtip in a 1.5-ml tube. Anti-ERα antibody or control human IgG was applied to pull down the chromatin associated with ERα. The chromatin–antibody complexes were collected with Protein G-Agarose. After washing and elution of the complexes from the beads, the DNA–protein crosslinks were reversed at 65 °C overnight. The amounts of the specific DNA fragment were then quantified by real-time PCR and normalized against the genomic DNA preparation from the same cells. Each group was made in triplicate.
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Manufacturer protocol
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