Publication protocol
Quantitative immunoblotting was performed as previously described (Janes, 2015). Samples were prepared in dithiothreitol-containing Laemmli sample buffer to a total volume of 20 or 40 μl. Polyacrylamide gels (8, 10, 12, or 15%) of 1.5-mm thickness were cast, and samples were electrophoresed in tris-glycine running buffer (25 mM tris base, 250 mM glycine, and 0.1% SDS) at 130 V. Proteins were transferred to a PVDF membrane (Millipore; Immobilon-FL, 0.45 μm pore size) in a Mini Trans-Blot Electrophoretic Transfer Cell (Bio-Rad) in transfer buffer (25 mM tris, 192 mM glycine, 0.0375% SDS, and 10–40% methanol) at 100 V for 1 hr on ice. Membranes were blocked with 0.5× Odyssey blocking buffer in PBS (fluorescence detection) or 5% nonfat skim milk in TBS-T (chemiluminescence detection). Primary antibodies were diluted with 0.5× Odyssey blocking buffer + 0.1% Tween-20 (fluorescence detection) or with 5% BSA in TBS-T (chemiluminescence detection).Membranes were washed and probed with secondary antibody diluted with 0.5× Odyssey blocking buffer (fluorescence detection) or with 5% nonfat skim milk in TBS-T (chemiluminescence detection). Membranes for fluorescence imaging were scanned on an Odyssey infrared scanner (LI-COR) at 169-μm resolution and 0-mm focus offset. Membranes for chemiluminescence were covered with SuperSignal West Femto Reagent (Thermo Fisher #34096) and chemiluminescent exposures were captured on a ChemiDoc MP gel imager (Bio-Rad) with “Chemi Hi Resolution” settings. Raw 16-bit images of exposures were analyzed in ImageJ with the gel analysis tool. Four independent samples provide >80% power to detect a 50% change in mean assuming a coefficient of variation of 20% and noncentral t statistics with a type I error rate of α = 0.05.
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