Publication protocol
Library screening: Recombinant human His-tagged CEACAM5 extracellular domain as well as recombinant human His-tagged HER2 extracellular domain were purchased at R&D systems. For library screening, respective library cells were grown overnight in SD-Trp medium at 30 °C and 200 rpm. Afterwards, cells were transferred to SG-Trp medium at approximately 107 cells/mL followed by incubation at 20 °C for 2 days. In general, antigen binding was detected by application of Penta-His Alexa Fluor 647 Conjugate antibody (Qiagen, 1:20 diluted in PBS). Fab display on the yeast surface was visualized using light chain specific goat F(ab’)2 anti-human kappa R-phycoerythrin (SouthernBiotech, 1:20 diluted in PBS). Labeling steps were performed with 107 cells/20 µL on ice.
Labeling of cells for FACS analysis or sorting was conducted by two consecutive washing steps of library candidates with PBS followed by incubation with the respective antigen at a concentration of 1 µM. After incubation on ice for approx. 30 min an additional washing step was performed, followed by staining with Penta-His Alexa Fluor 647 Conjugate antibody as well as light chain specific goat F(ab’)2 anti-human kappa R-phycoerythrin. Finally, cells were washed with PBS. FACS-sorting rounds were either performed on a Sony SH800 cell sorter (Sony) or on a MoFlo Legacy cell sorter (Beckman Coulter).
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